HI Jrapp,
I don't know the answer to your specific wiring question. But, I can tell you that I resolved my weak/no spark issue on 2 & 3 by adjusting the clearance spec on the cdi pulsar pickup that was aft (the one closer to front wheel was adjusted to spec, but the aft one was a much bigger...
OK, Thanks Zoocrew. I replaced it, (assuming pulse generator = the OKI MPS-200) not my problem. Swapped and replaced.
Or perhaps you are referring to engine left side cover where the cdi 'pickups' are....
I apologize for possible nomenclature differences. I find different folks describe...