Not to be a pest, but can you explain how you are checking the alignment of the wheels? I suggest with the bike on the center stand, taking a very straight 8-foot 2x4 (or suitable straight edge) & holding it next to the back wheel, a few inches up & see if the space on each side of the front tire to the board is equal. Check on both sides of the back tire. Since the front tire is thinner than the back tire, there should be an air gap between the board & the front tire, & it should be equal on both sides, if the back tire is centered & aligned for the sprockets. You may have to accommodate the center stand with the board though, spacing or such. This job is easier in a bike lift that hold the front tire. No need for the center stand, it can be raised up. You just need a straight line across the back tire forward past the front tire to check the alignment out.