I've never used pod filters but have heard that they can result in a lot of grief in getting the bike to run properly. I would try getting a stock airbox. Regardless, pods shouldn't affect idle too much. I agree with getting and using a sync tool and would suggest getting the Carbtune Pro Sync tool. BUT, you should check and adjust a few things first before syncing: valve clearances, timing (static), plugs, cam chain tensions, and the four pilot screws, one on each carb. For the pilot screws, check how many turns out they are. These things affect idle to a significant degree as they change the air fuel mixture at idle and when the throttle is slightly open. You should remove them and make sure they are clean as well as the passages, and that they have all the required parts. Careful, there is some pretty small parts (washers, o-rings, springs, etc). Then you turn them all the way in until they LIGHTLY seat. I stress that because they are fragile. Then turn them out anywhere from 1.5 to 3 turns. Most common opinions seem to be 2 or 2.5 turns. There is a long complicated procedure called the idle drop method in the service manual to adjust these to the right turns but it is very difficult and time consuming as not all pilots are very accessible (1 and 4 are, 3 less accessible, but two is tough because the starter and cover is in the way). As a result the bike can be idling for a long period of time, running hot, as you try get your hands under the carbs to turn the screws (unless there is a special tool for this). If you do attempt I would recommend having a fan pointed at the front of the engine and hook up a digital tachometer as you have to turn the pilots in or out and wait for increases/decreases in rpms of 50.